feat(agent): Refactor agent provisioning and cleanup logic for improved functionality

templates/BOOTSTRAP.md

@@ -8,9 +8,17 @@ There is no memory yet. Create what is missing and proceed without blocking.
 1) Create `memory/` and `memory.md` if missing.
 2) Read `IDENTITY.md`, `USER.md`, and `SOUL.md`.
 3) If any fields are blank, leave them blank. Do not invent values.
-4) Write a short note to `memory.md` that bootstrap completed and list any
+4) If `BASE_URL`, `AUTH_TOKEN`, and `BOARD_ID` are set in `TOOLS.md`, check in
+   to Mission Control to mark the agent online:
+```bash
+curl -s -X POST "$BASE_URL/api/v1/agents/heartbeat" \
+  -H "X-Agent-Token: $AUTH_TOKEN" \
+  -H "Content-Type: application/json" \
+  -d '{"name": "'$AGENT_NAME'", "board_id": "'$BOARD_ID'", "status": "online"}'
+```
+5) Write a short note to `memory.md` that bootstrap completed and list any
    missing fields (e.g., user name, timezone).
-5) Delete this file.
+6) Delete this file.
 
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